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1

Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments

Gradišar, Helena, Božič, Sabina, Doles, Tibor, Vengust, Damjan, Hafner-Bratkovič, Iva, Mertelj, Alenka, Webb, Ben, Šali, Andrej, Klavžar, Sandi, Jerala, Roman

Journal:

Nature Chemical Biology

Year:

2013

Language:

english

File:

PDF, 888 KB

english, 2013

2

Green Tea Catechins Inhibit Bacterial DNA Gyrase by Interaction with Its ATP Binding Site

Gradišar, Helena, Pristovšek, Primož, Plaper, Andreja, Jerala, Roman

Journal:

Journal of Medicinal Chemistry

Year:

2007

Language:

english

File:

PDF, 338 KB

english, 2007

3

Synthetic lipopeptides: a novel class of anti-infectives

Journal:

Expert Opinion on Investigational Drugs

Year:

2007

Language:

english

File:

PDF, 404 KB

english, 2007

4

Peptide and protein nanotechnology into the 2020s: beyond biology

Ulijn, Rein V., Jerala, Roman

Journal:

Chemical Society Reviews

Year:

2018

Language:

english

File:

PDF, 1.42 MB

english, 2018

5

On the mechanism of human stefin B folding: I. Comparison to homologous stefin A. Influence of pH and trifluoroethanol on the fast and slow folding phases

Eva Žerovnik, Richard Virden, Roman Jerala, Vito Turk, Jonathan P. Waltho

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 134 KB

english, 1998

6

On the mechanism of human stefin B folding: II. Folding from GuHCl unfolded, TFE denatured, acid denatured, and acid intermediate states

Eva Žerovnik, Roman Jerala, Richard Virden, Louise Kroon Žitko, Vito Turk, Jonathan P. Waltho

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 153 KB

english, 1998

7

Differences in the effects of TFE on the folding pathways of human stefins A and B

Eva Žerovnik, Richard Virden, Roman Jerala, Louise Kroon-Žitko, Vito Turk, Jonathan P. Waltho

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 275 KB

english, 1999

8

Major differences in stability and dimerization properties of two chimeric mutants of human stefins

Manca Kenig, Roman Jerala, Louise Kroon-Žitko, Vito Turk, Eva Žerovnik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 374 KB

english, 2001

9

Semiautomatic sequence-specific assignment of proteins based on the tertiary structure—The program st2nmr

Primož Pristovšek, Heinz Rüterjans, Roman Jerala

Journal:

Journal of Computational Chemistry

Year:

2002

Language:

english

File:

PDF, 126 KB

english, 2002

10

A Sensitive Triple-Resonance Pulse Sequence to Elucidate Correlations between[formula]Ni+1, and[formula]Nuclei

Roman Jerala, Gordon S. Rule

Journal:

Journal of Magnetic Resonance, Series B

Year:

1996

Language:

english

File:

PDF, 82 KB

english, 1996

11

Expression of soluble versatile peroxidase of Bjerkandera adusta in Escherichia coli

Martina Mohorčič, Mojca Benčina, Jožefa Friedrich, Roman Jerala

Journal:

Bioresource Technology

Year:

2009

Language:

english

File:

PDF, 440 KB

english, 2009

12

In silico fragment-based discovery of indolin-2-one analogues as potent DNA gyrase inhibitors

Marko Oblak, Simona Golič Grdadolnik, Miha Kotnik, Roman Jerala, Metka Filipič, Tomaž Šolmajer

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2005

Language:

english

File:

PDF, 219 KB

english, 2005

13

Comparison of backbone dynamics of monomeric and domain-swapped stefin A

Boštjan Japelj, Jonathan P. Waltho, Roman Jerala

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 374 KB

english, 2004

14

De novo design of orthogonal peptide pairs forming parallel coiled-coil heterodimers

Helena Gradišar, Roman Jerala

Journal:

Journal of Peptide Science

Year:

2011

Language:

english

File:

PDF, 233 KB

english, 2011

15

1H,15N and13C resonance assignments and secondary structure of group II phospholipase A2 fromAgkistrodon piscivorus piscivorus: Presence of an amino-terminal helix in solution

Roman Jerala, Paulo F. F. Almeida, Qiang Ye, Rodney L. Biltonen, Gordon S. Rule

Journal:

Journal of Biomolecular NMR

Year:

1996

Language:

english

File:

PDF, 1.15 MB

english, 1996

16

Bacterial expression and refolding of different fragments of human CD14

Andreja Majerle, Jurka Kidrič, Roman Jerala

Journal:

Pflügers Archiv European Journal of Physiology

Year:

2000

Language:

english

File:

PDF, 358 KB

english, 2000

17

Mixed-valence Cu(II)/Cu(I) complex of quinolone ciprofloxacin isolated by a hydrothermal reaction in the presence of l-histidine: comparison of biological activities of various copper–ciprofloxacin compounds

Petra Drevenšek, Tatjana Zupančič, Boris Pihlar, Roman Jerala, Uwe Kolitsch, Andreja Plaper, Iztok Turel

Journal:

Journal of Inorganic Biochemistry

Year:

2005

Language:

english

File:

PDF, 567 KB

english, 2005

18

Biophysical characterization of the interaction of Limulus polyphemus endotoxin neutralizing protein with lipopolysaccharide

Jörg Andrä, Patrick Garidel, Andreja Majerle, Roman Jerala, Richard Ridge, Erik Paus, Tom Novitsky, Michel H. J. Koch, Klaus Brandenburg

Journal:

Year:

2004

Language:

english

File:

PDF, 507 KB

english, 2004

19

Curcumin binds to the α-helical intermediate and to the amyloid form of prion protein – a new mechanism for the inhibition of PrPSc accumulation

Iva Hafner-Bratkovič, Jernej Gašperšič, Lojze M. Šmid, Mara Bresjanac, Roman Jerala

Journal:

Journal of Neurochemistry

Year:

2008

Language:

english

File:

PDF, 532 KB

english, 2008

20

Tetracysteine-tagged prion protein allows discrimination between the native and converted forms

Jernej Gašperšič, Iva Hafner-Bratkovič, Michel Stephan, Peter Veranič, Mojca Benčina, Ina Vorberg, Roman Jerala

Journal:

Year:

2010

Language:

english

File:

PDF, 698 KB

english, 2010

21

A second binding site for double-stranded RNA in TLR3 and consequences for interferon activation

Pirher, Nina, Ivičak, Karolina, Pohar, Jelka, Benčina, Mojca, Jerala, Roman

Journal:

Nature Structural and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 410 KB

english, 2008

22

Production of stable isotope enriched antimicrobial peptides in Escherichia coli: An application to the production of a 15N-enriched fragment of lactoferrin

Andreja Majerle, Jurka Kidrič, Roman Jerala

Journal:

Journal of Biomolecular NMR

Year:

2000

Language:

english

File:

PDF, 78 KB

english, 2000

23

Folding studies of the cysteine proteinase inhibitor — human stefin A

Eva Žerovnik, Brigita Lenarčič, Roman Jerala, Vito Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1991

Language:

english

File:

PDF, 600 KB

english, 1991

24

Monoclonal antibodies to human stefin B and determination of their epitopes

Nataša Kopitar-Jerala, Vladka Čurin-Šerbec, Roman Jerala, Igor Krizaj, Franc Gubenšek, Vito Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1993

Language:

english

File:

PDF, 498 KB

english, 1993

25

Compactness of the molten globule in comparison to unfolded states as observed by size-exclusion chromatography

Eva Žerovnik, Roman Jerala, Nataša Poklar, Luise Kroon-Žitko, V. Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1994

Language:

english

File:

PDF, 336 KB

english, 1994

26

Prevention of microvesiculation by adhesion of buds to the mother cell membrane — A possible anticoagulant effect of healthy donor plasma

Mojca Frank, Mateja Manček-Keber, Mojca Kržan, Snežna Sodin-Šemrl, Roman Jerala, Aleš Iglič, Blaž Rozman, Veronika Kralj-Iglič

Journal:

Autoimmunity Reviews

Year:

2008

Language:

english

File:

PDF, 223 KB

english, 2008

27

In silico discovery and biophysical evaluation of novel 5-(2-hydroxybenzylidene) rhodanine inhibitors of DNA gyrase B

Matjaž Brvar, Andrej Perdih, Vesna Hodnik, Miha Renko, Gregor Anderluh, Roman Jerala, Tom Solmajer

Journal:

Bioorganic & Medicinal Chemistry

Year:

2012

Language:

english

File:

PDF, 1005 KB

english, 2012

28

Taxanes inhibit human TLR4 signaling by binding to MD-2

Nuša Resman, Helena Gradišar, Jožica Vašl, Mateja Manček Keber, Primož Pristovšek, Roman Jerala

Journal:

Year:

2008

Language:

english

File:

PDF, 612 KB

english, 2008

29

Calorimetric measurements of thermal denaturation of stefins A and B : Comparison to predicted thermodynamics of stefin-B unfolding

Eva ŽEROVNIK, Karl LOHNER, Roman JERALA, Peter LAGGNER, Vito TURK

Journal:

Year:

1992

Language:

english

File:

PDF, 510 KB

english, 1992

30

Elongation on the Amino-terminal Part of Stefin B Decreases Inhibition of Cathepsin H

Roman Jerala, Louisa Kroon-žitko, Tatjana Popovič, Vito Turk

Journal:

Year:

1994

Language:

english

File:

PDF, 834 KB

english, 1994

31

Structural Characterisation of Human Stefin A in Solution and Implications for Binding to Cysteine Proteinases

John R. Martin, Roman Jerala, Louise Kroon-Žitko, Eva Žerovnik, Vito Turk, Jonathan P. Waltho

Journal:

Year:

1994

Language:

english

File:

PDF, 1.39 MB

english, 1994

32

Characterization of the Equilibrium Intermediates in Acid Denaturation of Human Stefin B

Eva Žerovnik, Roman Jerala, Luise Kroon-Žitko, Vito Turk, Karl Lohner

Journal:

Year:

1997

Language:

english

File:

PDF, 947 KB

english, 1997

33

Identification of LPS-Binding Peptide Fragment of MD-2, a Toll-Receptor Accessory Protein

Mateja Manček, Primož Pristovšek, Roman Jerala

Journal:

Biochemical and Biophysical Research Communications

Year:

2002

Language:

english

File:

PDF, 73 KB

english, 2002

34

The Three-dimensional Solution Structure of Human Stefin A

John R. Martin, Jeremy C. Craven, Roman Jerala, Louise Kroon-Žitko, Eva Žerovnik, Vito Turk, Jonathan P. Waltho

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 1.03 MB

english, 1995

35

Accessing the global minimum conformation of stefin A dimer by annealing under partially denaturing conditions

Roman Jerala, Eva Žerovnik

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 311 KB

english, 1999

36

Expression and Refolding of Functional Fragments of the Human Lipopolysaccharide Receptor CD14 in Escherichia coli and Pichia pastoris

Andreja Majerle, Jurka Kidrič, Roman Jerala

Journal:

Protein Expression and Purification

Year:

1999

Language:

english

File:

PDF, 128 KB

english, 1999

37

Cloning a synthetic gene for human stefin B and its expression in E. coli

Roman Jerala, Mojca Trstenjak, Brigita Lenarčič, Vito Turk

Journal:

Year:

1988

Language:

english

File:

PDF, 350 KB

english, 1988

38

Primary structure of a new cysteine proteinase inhibitor from pig leucocytes

Anka Ritonja, Majda Kopitar, Roman Jerala, Vito Turk

Journal:

Year:

1989

Language:

english

File:

PDF, 345 KB

english, 1989

39

Influence of N-acylation of a peptide derived from human lactoferricin on membrane selectivity

Dagmar Zweytick, Georg Pabst, Peter M. Abuja, Alexander Jilek, Sylvie E. Blondelle, Jörg Andrä, Roman Jerala, Daniel Monreal, Guillermo Martinez de Tejada, Karl Lohner

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2006

Language:

english

File:

PDF, 467 KB

english, 2006

40

Expression, purification and structural studies of a short antimicrobial peptide

Mateja Zorko, Boštjan Japelj, Iva Hafner-Bratkovič, Roman Jerala

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

41

Different functional role of domain boundaries of Toll-like receptor 4

Mireille Treeby, Jožica Vašl, Peter Ota, Jožica Friedrich, Roman Jerala

Journal:

Biochemical and Biophysical Research Communications

Year:

2009

Language:

english

File:

PDF, 517 KB

english, 2009

42

Introduction of glutamines into the B2–H2 loop promotes prion protein conversion

Matevž Avbelj, Iva Hafner-Bratkovič, Roman Jerala

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 762 KB

english, 2011

43

Structural biology of the LPS recognition

Journal:

International Journal of Medical Microbiology

Year:

2007

Language:

english

File:

PDF, 997 KB

english, 2007

44

Chimeric flagellin as the self-adjuvanting antigen for the activation of immune response against Helicobacter pylori

Jerneja Mori, Tanja Vranac, Boštjan Smrekar, Maja Černilec, Vladka Čurin Šerbec, Simon Horvat, Alojz Ihan, Mojca Benčina, Roman Jerala

Journal:

Year:

2012

Language:

english

File:

PDF, 721 KB

english, 2012

45

Protein inhibitors form complexes with procathepsin L and augment cleavage of the propeptide

Andreja Majerle, Roman Jerala

Journal:

Archives of Biochemistry and Biophysics

Year:

2003

Language:

english

File:

PDF, 169 KB

english, 2003

46

Characterization of quercetin binding site on DNA gyrase

Andreja Plaper, Mojca Golob, Iva Hafner, Marko Oblak, Tomaž Šolmajer, Roman Jerala

Journal:

Biochemical and Biophysical Research Communications

Year:

2003

Language:

english

File:

PDF, 289 KB

english, 2003

47

Comparative analysis of selected methods for the assessment of antimicrobial and membrane-permeabilizing activity: a case study for lactoferricin derived peptides

Susana Sánchez-Gómez, Marta Lamata, José Leiva, Sylvie E Blondelle, Roman Jerala, Jörg Andrä, Klaus Brandenburg, Karl Lohner, Ignacio Moriyón, Guillermo Martínez-de-Tejada

Journal:

BMC Microbiology

Year:

2008

Language:

english

File:

PDF, 270 KB

english, 2008

48

Short Membrane Active (Lipo)-peptides - Interplay Of Domain Formation, Membrane Curvature Stress And Cellular Leakage

Zweytick, Dagmar, Deutsch, Guenter, Tumer, Sabine, Zorko, Mateja, Jerala, Roman, Blondelle, Sylvie, Monreal, Daniel, de Tejada, Guillermo Martinez, Lohner, Karl

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

49

Determination of the physiological 2:2 TLR5:flagellin activation stoichiometry revealed by the activity of a fusion receptor

Ivičak-Kocjan, Karolina, Panter, Gabriela, Benčina, Mojca, Jerala, Roman

Journal:

Biochemical and Biophysical Research Communications

Year:

2013

Language:

english

File:

PDF, 685 KB

english, 2013

50

Conformationally Constrained Lipid A Mimetics for Exploration of Structural Basis of TLR4/MD-2 Activation by Lipopolysaccharide

Artner, Daniel, Oblak, Alja, Ittig, Simon, Garate, Jose Antonio, Horvat, Simon, Arrieumerlou, Cécile, Hofinger, Andreas, Oostenbrink, Chris, Jerala, Roman, Kosma, Paul, Zamyatina, Alla

Journal:

ACS Chemical Biology

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

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